SNP Detail For rs57244888
1.Mapping Information
Human SNP ID rs57244888
Human chromosome chr2
Human SNP position 16280877
Pig chromosome chr3
Pig SNP position 129520463
2.Annotation Information
PubMed ID25855136
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/25855136
StudyNew basal cell carcinoma susceptibility loci.
Disease/TraitBasal cell carcinoma
Initial sample4,572 European ancestry cases, 266,358 European ancestry controls
Replication sampleup to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls
Region2p24.3
Chromosome idchr2
Chromosome position16280877
Reported geneMYCN, FAM49A
Mapped geneLOC105373443 - LOC105373444
Upstream gene id105373443
Downstream gene id105373444
SNP gene ids
Upstream gene distance75937
Downstream gene distance174118
SNP risk allelers57244888-T
SNPsrs57244888
Merged0
SNP id current57244888
Contextintergenic_variant
Intergenic1
Allele frequency0.898
P value0.000000000005
Pvalue mlog11.3010299956639
P value text
Or beta1.32
%95 Ci[1.22-1.43]
PlatformIllumina [24988228] (imputed)
CNVN
Mapped traitbasal cell carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004193
Study accessionGCST002842