Human SNP ID | rs57244888 |
---|---|
Human chromosome | chr2 |
Human SNP position | 16280877 |
Pig chromosome | chr3 |
Pig SNP position | 129520463 |
PubMed ID | 25855136 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/25855136 |
Study | New basal cell carcinoma susceptibility loci. |
Disease/Trait | Basal cell carcinoma |
Initial sample | 4,572 European ancestry cases, 266,358 European ancestry controls |
Replication sample | up to 956 European ancestry cases, up to 4,214 European ancestry controls, 526 cases, 528 controls |
Region | 2p24.3 |
Chromosome id | chr2 |
Chromosome position | 16280877 |
Reported gene | MYCN, FAM49A |
Mapped gene | LOC105373443 - LOC105373444 |
Upstream gene id | 105373443 |
Downstream gene id | 105373444 |
SNP gene ids | |
Upstream gene distance | 75937 |
Downstream gene distance | 174118 |
SNP risk allele | rs57244888-T |
SNPs | rs57244888 |
Merged | 0 |
SNP id current | 57244888 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.898 |
P value | 0.000000000005 |
Pvalue mlog | 11.3010299956639 |
P value text | |
Or beta | 1.32 |
%95 Ci | [1.22-1.43] |
Platform | Illumina [24988228] (imputed) |
CNV | N |
Mapped trait | basal cell carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004193 |
Study accession | GCST002842 |