SNP Detail For rs569805
1.Mapping Information
Human SNP ID rs569805
Human chromosome chr2
Human SNP position 168926370
Pig chromosome chr15
Pig SNP position 84510389
2.Annotation Information
PubMed ID21386085
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/21386085
StudyA bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium.
Disease/TraitMetabolic syndrome (bivariate traits)
Initial sample22,161 European ancestry individuals
Replication sampleNA
Region2q31.1
Chromosome idchr2
Chromosome position168926370
Reported geneABCB11
Mapped geneABCB11
Upstream gene id
Downstream gene id
SNP gene ids8647
Upstream gene distance
Downstream gene distance
SNP risk allelers569805-A
SNPsrs569805
Merged0
SNP id current569805
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000009
Pvalue mlog7.04575749056067
P value text(HDLC-GLUC)
Or beta0.16
%95 Ci[0.10-0.22] unit increase
PlatformAffymetrix, Illumina [~ 2500000] (imputed)
CNVN
Mapped traitmetabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST001007