SNP Detail For rs568617
1.Mapping Information
Human SNP ID rs568617
Human chromosome chr11
Human SNP position 65885771
Pig chromosome chr2
Pig SNP position 5548232
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitCrohn__s disease
Initial sample5,956 European ancestry cases, 14,927 European ancestry controls
Replication sample14,594 European ancestry cases, 26,715 European ancestry controls, 151 Iranian ancestry cases, 342 Iranian ancestry controls, 184 Indian ancestry cases, 990 Indian ancestry controls, 1,690 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region11q13.1
Chromosome idchr11
Chromosome position65885771
Reported geneNR
Mapped geneFIBP
Upstream gene id
Downstream gene id
SNP gene ids9158
Upstream gene distance
Downstream gene distance
SNP risk allelers568617-A
SNPsrs568617
Merged
SNP id current568617
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.1883
P value0.00000002
Pvalue mlog7.69897000433601
P value text(EA)
Or beta1.0888312
%95 Ci[1.06-1.12]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST003044