SNP Detail For rs56823429
1.Mapping Information
Human SNP ID rs56823429
Human chromosome chr16
Human SNP position 81500184
Pig chromosome chr6
Pig SNP position 7368880
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitHDL cholesterol
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region16q23.2
Chromosome idchr16
Chromosome position81500184
Reported geneCMIP
Mapped geneCMIP
Upstream gene id
Downstream gene id
SNP gene ids80790
Upstream gene distance
Downstream gene distance
SNP risk allelers56823429-A
SNPsrs56823429
Merged
SNP id current56823429
Contextintron_variant
Intergenic0
Allele frequency0.71
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.037
%95 Ci[0.023-0.051] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traithigh density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004612
Study accessionGCST002899