Human SNP ID | rs56823429 |
---|---|
Human chromosome | chr16 |
Human SNP position | 81500184 |
Pig chromosome | chr6 |
Pig SNP position | 7368880 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | HDL cholesterol |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 16q23.2 |
Chromosome id | chr16 |
Chromosome position | 81500184 |
Reported gene | CMIP |
Mapped gene | CMIP |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 80790 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs56823429-A |
SNPs | rs56823429 |
Merged | |
SNP id current | 56823429 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.71 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | |
Or beta | 0.037 |
%95 Ci | [0.023-0.051] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002899 |