SNP Detail For rs567754
1.Mapping Information
Human SNP ID rs567754
Human chromosome chr5
Human SNP position 79120593
Pig chromosome chr2
Pig SNP position 89417562
2.Annotation Information
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitToenail selenium levels
Initial sample4,162 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79120593
Reported geneBHMT, BHMT2, JMY
Mapped geneBHMT
Upstream gene id
Downstream gene id
SNP gene ids635
Upstream gene distance
Downstream gene distance
SNP risk allelers567754-T
SNPsrs567754
Merged0
SNP id current567754
Contextintron_variant
Intergenic0
Allele frequency0.33
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.018
%95 Ci[0.010-0.026] unit decrease
PlatformAffymetrix, Illumina [2378986] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002671
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitBlood and toenail selenium levels
Initial sample9,639 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79120593
Reported geneBHMT, BHMT2, JMY
Mapped geneBHMT
Upstream gene id
Downstream gene id
SNP gene ids635
Upstream gene distance
Downstream gene distance
SNP risk allelers567754-T
SNPsrs567754
Merged0
SNP id current567754
Contextintron_variant
Intergenic0
Allele frequency0.34
P value8E-20
Pvalue mlog19.096910013008
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2379663] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002670