Human SNP ID | rs567754 |
---|---|
Human chromosome | chr5 |
Human SNP position | 79120593 |
Pig chromosome | chr2 |
Pig SNP position | 89417562 |
PubMed ID | 25343990 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25343990 |
Study | Genome-wide association study of selenium concentrations. |
Disease/Trait | Toenail selenium levels |
Initial sample | 4,162 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79120593 |
Reported gene | BHMT, BHMT2, JMY |
Mapped gene | BHMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs567754-T |
SNPs | rs567754 |
Merged | 0 |
SNP id current | 567754 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.33 |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 0.018 |
%95 Ci | [0.010-0.026] unit decrease |
Platform | Affymetrix, Illumina [2378986] (imputed) |
CNV | N |
Mapped trait | selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006331 |
Study accession | GCST002671 |
PubMed ID | 25343990 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25343990 |
Study | Genome-wide association study of selenium concentrations. |
Disease/Trait | Blood and toenail selenium levels |
Initial sample | 9,639 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79120593 |
Reported gene | BHMT, BHMT2, JMY |
Mapped gene | BHMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs567754-T |
SNPs | rs567754 |
Merged | 0 |
SNP id current | 567754 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 8E-20 |
Pvalue mlog | 19.096910013008 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2379663] (imputed) |
CNV | N |
Mapped trait | selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006331 |
Study accession | GCST002670 |