SNP Detail For rs56728521
1.Mapping Information
Human SNP ID rs56728521
Human chromosome chr18
Human SNP position 1984420
Pig chromosome chr6
Pig SNP position 97541326
2.Annotation Information
PubMed ID25130324
JournalGenes Brain Behav
Linkwww.ncbi.nlm.nih.gov/pubmed/25130324
StudyA genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl__s gyrus.
Disease/TraitHeschl__s gyrus morphology
Initial sample1,778 European ancestry individuals, 1,276 individuals
Replication sampleNA
Region18p11.32
Chromosome idchr18
Chromosome position1984420
Reported geneMETTL4
Mapped geneLOC105371958 - LOC105371957
Upstream gene id105371958
Downstream gene id105371957
SNP gene ids
Upstream gene distance61347
Downstream gene distance36539
SNP risk allelers56728521-A
SNPsrs56728521
Merged0
SNP id current56728521
Contextintron_variant
Intergenic1
Allele frequency0.92
P value0.000007
Pvalue mlog5.15490195998574
P value text(Right HG area)
Or beta8.65
%95 Ciunit decrease
PlatformAffymetrix, Illumina [4103035] (imputed)
CNVN
Mapped traitHeschl__s gyrus morphology measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005852
Study accessionGCST002579