SNP Detail For rs564816
1.Mapping Information
Human SNP ID rs564816
Human chromosome chr9
Human SNP position 4015370
Pig chromosome chr1
Pig SNP position 243776815
2.Annotation Information
PubMed ID19901119
JournalJ Clin Oncol
Linkwww.ncbi.nlm.nih.gov/pubmed/19901119
StudyGermline genetic variation in an organic anion transporter polypeptide associated with methotrexate pharmacokinetics and clinical effects.
Disease/TraitMethotrexate phramacokinetics (acute lymphoblastic leukemia)
Initial sample315 European ancestry cases, 73 African American cases, 5 Asian ancestry cases, 247 cases
Replication sampleNA
Region9p24.2
Chromosome idchr9
Chromosome position4015370
Reported geneGLIS3
Mapped geneGLIS3
Upstream gene id
Downstream gene id
SNP gene ids169792
Upstream gene distance
Downstream gene distance
SNP risk allelers564816-C
SNPsrs564816
Merged0
SNP id current564816
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.0000003
Pvalue mlog6.52287874528033
P value text
Or beta
%95 Ci[NR]
PlatformAffymetrix [398699]
CNVN
Mapped traitresponse to antineoplastic agent
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327
Study accessionGCST000523