SNP Detail For rs564349
1.Mapping Information
Human SNP ID rs564349
Human chromosome chr5
Human SNP position 172897975
Pig chromosome chr16
Pig SNP position 55651270
2.Annotation Information
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitUlcerative colitis
Initial sample6,968 European ancestry cases, 20,464 European ancestry controls
Replication sample10,679 European ancestry cases, 26,715 European ancestry controls, 397 Iranian ancestry cases, 342 Iranian ancestry controls, 1,239 Indian ancestry cases, 990 Indian ancestry controls, 1,134 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region5q35.1
Chromosome idchr5
Chromosome position172897975
Reported geneC5orf4, DUSP1
Mapped geneERGIC1
Upstream gene id
Downstream gene id
SNP gene ids57222
Upstream gene distance
Downstream gene distance
SNP risk allelers564349-G
SNPsrs564349
Merged
SNP id current564349
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.3183
P value0.000002
Pvalue mlog5.69897000433601
P value text(EA)
Or beta1.0646768
%95 Ci[1.04-1.09]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST003045
PubMed ID26192919
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26192919
StudyAssociation analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations.
Disease/TraitInflammatory bowel disease
Initial sample12,882 European ancestry cases, 21,770 European ancestry controls
Replication sample25,273 European ancestry cases, 26,715 European ancestry controls, 548 Iranian ancestry cases, 342 Iranian ancestry control, 1,423 Indian ancestry cases, 990 Indian ancestry controls, 2,824 East Asian ancestry cases, 3,719 East Asian ancestry controls
Region5q35.1
Chromosome idchr5
Chromosome position172897975
Reported geneC5orf4, DUSP1
Mapped geneERGIC1
Upstream gene id
Downstream gene id
SNP gene ids57222
Upstream gene distance
Downstream gene distance
SNP risk allelers564349-G
SNPsrs564349
Merged
SNP id current564349
Context3_prime_UTR_variant
Intergenic0
Allele frequency0.3183
P value0.0000002
Pvalue mlog6.69897000433601
P value text(EA)
Or beta1.056796
%95 Ci[1.04-1.08]
PlatformAffymetrix, Illumina [~ 9000000] (imputed)
CNVN
Mapped traitinflammatory bowel disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003767
Study accessionGCST003043