SNP Detail For rs564148
1.Mapping Information
Human SNP ID rs564148
Human chromosome chr1
Human SNP position 33708220
Pig chromosome chr6
Pig SNP position 84064984
2.Annotation Information
PubMed ID22952603
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22952603
StudyGenome-wide association study of d-amphetamine response in healthy volunteers identifies putative associations, including cadherin 13 (CDH13).
Disease/TraitResponse to amphetamines
Initial sample1 American Indian ancestry individual, 18 African American individuals, 10 Asian ancestry individuals, 325 European ancestry individuals, 17 Hispanic individuals, 10 individuals
Replication sampleNA
Region1p35.1
Chromosome idchr1
Chromosome position33708220
Reported geneCSMD2
Mapped geneCSMD2
Upstream gene id
Downstream gene id
SNP gene ids114784
Upstream gene distance
Downstream gene distance
SNP risk allelers564148-?
SNPsrs564148
Merged0
SNP id current564148
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000009
Pvalue mlog5.04575749056067
P value text(SF10)
Or beta
%95 Ci
PlatformAffymetrix [5476100] (imputed)
CNVN
Mapped traitresponse to drug
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042493
Study accessionGCST001651