SNP Detail For rs56398881
1.Mapping Information
Human SNP ID rs56398881
Human chromosome chr1
Human SNP position 218505281
Pig chromosome chr10
Pig SNP position 10408643
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio
Initial sample10,094 European ancestry current and former smoker individuals, 3,260 African American current and former smoker individuals, 178 current and former smoker individuals
Replication sampleNA
Region1q41
Chromosome idchr1
Chromosome position218505281
Reported geneIntergenic
Mapped geneTGFB2 - LOC105372924
Upstream gene id7042
Downstream gene id105372924
SNP gene ids
Upstream gene distance60662
Downstream gene distance193283
SNP risk allelers56398881-T
SNPsrs56398881
Merged0
SNP id current56398881
Contextupstream_gene_variant
Intergenic1
Allele frequency0.831
P value0.000001
Pvalue mlog6
P value text
Or beta0.012
%95 Ciunit decrease
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003264