SNP Detail For rs563748
1.Mapping Information
Human SNP ID rs563748
Human chromosome chr11
Human SNP position 59999026
Pig chromosome chr2
Pig SNP position 10999235
2.Annotation Information
PubMed ID24939585
JournalEur J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/24939585
StudyGenome-wide association analysis demonstrates the highly polygenic character of age-related hearing impairment.
Disease/TraitAge-related hearing impairment (interaction)
Initial sample1,489 European ancestry individuals
Replication sampleNA
Region10q24.2 x 11q12.1
Chromosome idchr10 x 11
Chromosome position100063786 x 59999026
Reported geneNR x NR
Mapped geneCPN1 x OOSP1 - LOC105369444
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers4462272-? x rs563748-?
SNPsrs4462272 x rs563748
Merged
SNP id current
Contextintron_variant x downstream_gene_variant
Intergenic
Allele frequencyNR
P value0.000000008
Pvalue mlog8.09691001300805
P value text
Or beta
%95 Ci
PlatformIllumina [629437] (imputed)
CNVN
Mapped traitage-related hearing impairment
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005782
Study accessionGCST002487