Human SNP ID | rs563507 |
---|---|
Human chromosome | chr10 |
Human SNP position | 34529060 |
Pig chromosome | chr10 |
Pig SNP position | 62900368 |
PubMed ID | 19684603 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19684603 |
Study | Germline genomic variants associated with childhood acute lymphoblastic leukemia. |
Disease/Trait | Acute lymphoblastic leukemia (childhood) |
Initial sample | 317 European ancestry cases, 17,958 European ancestry controls |
Replication sample | NA |
Region | 10p11.21 |
Chromosome id | chr10 |
Chromosome position | 34529060 |
Reported gene | PARD3 |
Mapped gene | PARD3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 56288 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs563507-A |
SNPs | rs563507 |
Merged | 0 |
SNP id current | 563507 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.04 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 2 |
%95 Ci | [1.40-2.70] |
Platform | Affymetrix [307944] |
CNV | N |
Mapped trait | acute lymphoblastic leukemia |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000220 |
Study accession | GCST000464 |