SNP Detail For rs563507
1.Mapping Information
Human SNP ID rs563507
Human chromosome chr10
Human SNP position 34529060
Pig chromosome chr10
Pig SNP position 62900368
2.Annotation Information
PubMed ID19684603
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19684603
StudyGermline genomic variants associated with childhood acute lymphoblastic leukemia.
Disease/TraitAcute lymphoblastic leukemia (childhood)
Initial sample317 European ancestry cases, 17,958 European ancestry controls
Replication sampleNA
Region10p11.21
Chromosome idchr10
Chromosome position34529060
Reported genePARD3
Mapped genePARD3
Upstream gene id
Downstream gene id
SNP gene ids56288
Upstream gene distance
Downstream gene distance
SNP risk allelers563507-A
SNPsrs563507
Merged0
SNP id current563507
Contextintron_variant
Intergenic0
Allele frequency0.04
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta2
%95 Ci[1.40-2.70]
PlatformAffymetrix [307944]
CNVN
Mapped traitacute lymphoblastic leukemia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000220
Study accessionGCST000464