SNP Detail For rs56161216
1.Mapping Information
Human SNP ID rs56161216
Human chromosome chr10
Human SNP position 13646798
Pig chromosome chr10
Pig SNP position 52904184
2.Annotation Information
PubMed ID24324551
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24324551
StudyGenome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects.
Disease/TraitParasitemia in Tripanosoma cruzi seropositivity
Initial sample580 Brazilian ancestry individuals
Replication sampleNA
Region10p13
Chromosome idchr10
Chromosome position13646798
Reported geneNR
Mapped geneFRMD4A, LOC101928524
Upstream gene id
Downstream gene id
SNP gene ids55691, 101928524
Upstream gene distance
Downstream gene distance
SNP risk allelers56161216-?
SNPsrs56161216
Merged0
SNP id current56161216
Context3_prime_UTR_variant
Intergenic0
Allele frequencyNR
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta
%95 Ci
PlatformAffymetrix [5486770] (imputed)
CNVN
Mapped traitparasitemia measurement, Trypanosoma cruzi seropositivity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005528, http://www.ebi.ac.uk/efo/EFO_0005530
Study accessionGCST002282