Human SNP ID | rs56161216 |
---|---|
Human chromosome | chr10 |
Human SNP position | 13646798 |
Pig chromosome | chr10 |
Pig SNP position | 52904184 |
PubMed ID | 24324551 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24324551 |
Study | Genome wide association study (GWAS) of Chagas cardiomyopathy in Trypanosoma cruzi seropositive subjects. |
Disease/Trait | Parasitemia in Tripanosoma cruzi seropositivity |
Initial sample | 580 Brazilian ancestry individuals |
Replication sample | NA |
Region | 10p13 |
Chromosome id | chr10 |
Chromosome position | 13646798 |
Reported gene | NR |
Mapped gene | FRMD4A, LOC101928524 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 55691, 101928524 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs56161216-? |
SNPs | rs56161216 |
Merged | 0 |
SNP id current | 56161216 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix [5486770] (imputed) |
CNV | N |
Mapped trait | parasitemia measurement, Trypanosoma cruzi seropositivity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005528, http://www.ebi.ac.uk/efo/EFO_0005530 |
Study accession | GCST002282 |