Human SNP ID | rs560713 |
---|---|
Human chromosome | chr6 |
Human SNP position | 136183898 |
Pig chromosome | chr1 |
Pig SNP position | 31423662 |
PubMed ID | 24002674 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/24002674 |
Study | Genome-wide association study and meta-analysis of intraocular pressure. |
Disease/Trait | Intraocular pressure |
Initial sample | 2,847 European ancestry primary open angle glaucoma cases, 3,389 European ancestry controls |
Replication sample | NA |
Region | 6q23.3 |
Chromosome id | chr6 |
Chromosome position | 136183898 |
Reported gene | PDE7B |
Mapped gene | PDE7B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 27115 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs560713-A |
SNPs | rs560713 |
Merged | 0 |
SNP id current | 560713 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.32 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.53 |
%95 Ci | [0.24-0.82] mmHg decrease |
Platform | Illumina [466573] |
CNV | N |
Mapped trait | intraocular pressure measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004695 |
Study accession | GCST002168 |