SNP Detail For rs55966191
1.Mapping Information
Human SNP ID rs55966191
Human chromosome chr5
Human SNP position 58227651
Pig chromosome chr16
Pig SNP position 39798438
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxypropylmercapturic acid levels in smokers
Initial sample362 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 438 European ancestry current smoker individuals, 449 Latino current smoker individuals, 704 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position58227651
Reported geneNR
Mapped geneLOC105378983 - LOC105378984
Upstream gene id105378983
Downstream gene id105378984
SNP gene ids
Upstream gene distance8751
Downstream gene distance162630
SNP risk allelers55966191-?
SNPsrs55966191
Merged
SNP id current55966191
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text(AA)
Or beta1.042
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxypropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007014
Study accessionGCST002956
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region5q11.2
Chromosome idchr5
Chromosome position58227651
Reported geneNR
Mapped geneLOC105378983 - LOC105378984
Upstream gene id105378983
Downstream gene id105378984
SNP gene ids
Upstream gene distance8751
Downstream gene distance162630
SNP risk allelers55966191-?
SNPsrs55966191
Merged
SNP id current55966191
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.00000009
Pvalue mlog7.04575749056067
P value text(AA)
Or beta0.9971
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957