SNP Detail For rs55952756
1.Mapping Information
Human SNP ID rs55952756
Human chromosome chrX
Human SNP position 44460694
Pig chromosome chrX
Pig SNP position 43847150
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
RegionXp11.3
Chromosome idchrX
Chromosome position44460694
Reported geneNR
Mapped geneEFHC2 - FDPSP5
Upstream gene id80258
Downstream gene id2229
SNP gene ids
Upstream gene distance117017
Downstream gene distance15277
SNP risk allelers55952756-?
SNPsrs55952756
Merged
SNP id current55952756
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text(Native Hawaiian)
Or beta0.7218
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957