SNP Detail For rs55949311
1.Mapping Information
Human SNP ID rs55949311
Human chromosome chr13
Human SNP position 53557781
Pig chromosome chr11
Pig SNP position 27867273
2.Annotation Information
PubMed ID26220383
JournalEpilepsy Res
Linkwww.ncbi.nlm.nih.gov/pubmed/26220383
StudyGWAS identifies two susceptibility loci for lamotrigine-induced skin rash in patients with epilepsy.
Disease/TraitEpilepsy and lamotrigine-induced maculopapular eruptions
Initial sample34 Korean ancestry cases, 1,080 Korean ancestry healthy controls
Replication sampleNA
Region13q14.3
Chromosome idchr13
Chromosome position53557781
Reported geneLINC00558
Mapped geneLOC105370210
Upstream gene id
Downstream gene id
SNP gene ids105370210
Upstream gene distance
Downstream gene distance
SNP risk allelers55949311-?
SNPsrs55949311
Merged
SNP id current55949311
Contextintergenic_variant
Intergenic0
Allele frequency0.01
P value0.000000008
Pvalue mlog8.09691001300805
P value text
Or beta9.7
%95 Ci[NR]
PlatformAffymetrix [4893794] (imputed)
CNVN
Mapped traitresponse to lamotrigine, maculopapular eruption, epilepsy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007661, http://www.ebi.ac.uk/efo/EFO_1001253, http://www.ebi.ac.uk/efo/EFO_0000474
Study accessionGCST002949