SNP Detail For rs55940034
1.Mapping Information
Human SNP ID rs55940034
Human chromosome chr13
Human SNP position 110390962
Pig chromosome chr11
Pig SNP position 84585762
2.Annotation Information
PubMed ID26343387
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26343387
StudyA comprehensive 1000 Genomes-based genome-wide association meta-analysis of coronary artery disease.
Disease/TraitMyocardial infarction
Initial sample27,509 European ancestry cases, 130 African American cases, 278 Hispanic American cases, 10,257 South Asian ancestry cases, 288 Lebanese ancestry cases, 1,687 East Asian ancestry cases, 99,121 European ancestry controls, 2,778 African American controls, 3
Replication sampleNA
Region13q34
Chromosome idchr13
Chromosome position110390962
Reported geneCOL4A2, COL4A1
Mapped geneCOL4A2
Upstream gene id
Downstream gene id
SNP gene ids1284
Upstream gene distance
Downstream gene distance
SNP risk allelers55940034-G
SNPsrs55940034
Merged
SNP id current55940034
Contextintron_variant
Intergenic0
Allele frequency0.27
P value0.00000008
Pvalue mlog7.09691001300805
P value text
Or beta1.07
%95 Ci[1.04-1.09]
PlatformAffymetrix, Illumina [8600000] (imputed)
CNVN
Mapped traitmyocardial infarction
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000612
Study accessionGCST003117