SNP Detail For rs55884448
1.Mapping Information
Human SNP ID rs55884448
Human chromosome chr6
Human SNP position 97153651
Pig chromosome chr1
Pig SNP position 72734280
2.Annotation Information
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1 in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position97153651
Reported geneMMS22L
Mapped geneMMS22L
Upstream gene id
Downstream gene id
SNP gene ids253714
Upstream gene distance
Downstream gene distance
SNP risk allelers55884448-A
SNPsrs55884448
Merged0
SNP id current55884448
Contextintron_variant
Intergenic0
Allele frequency0.972
P value0.000002
Pvalue mlog5.69897000433601
P value text(AA)
Or beta0.378
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitforced expiratory volume, response to bronchodilator, chronic obstructive pulmonary disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004314, http://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341
Study accessionGCST003263
PubMed ID26634245
JournalBMC Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26634245
StudyA genome-wide association study identifies risk loci for spirometric measures among smokers of European and African ancestry.
Disease/TraitPost bronchodilator FEV1/FVC ratio in COPD
Initial sample5,439 European ancestry current and former smoker cases, 821 African American current and former smoker cases
Replication sampleNA
Region6q16.1
Chromosome idchr6
Chromosome position97153651
Reported geneMMS22L
Mapped geneMMS22L
Upstream gene id
Downstream gene id
SNP gene ids253714
Upstream gene distance
Downstream gene distance
SNP risk allelers55884448-A
SNPsrs55884448
Merged0
SNP id current55884448
Contextintron_variant
Intergenic0
Allele frequency0.972
P value0.000001
Pvalue mlog6
P value text(AA)
Or beta0.092
%95 CiNR unit increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitresponse to bronchodilator, chronic obstructive pulmonary disease, FEV/FEC ratio
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097366, http://www.ebi.ac.uk/efo/EFO_0000341, http://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST003265