Human SNP ID | rs55864139 |
---|---|
Human chromosome | chr20 |
Human SNP position | 41420939 |
Pig chromosome | chr17 |
Pig SNP position | 49518752 |
PubMed ID | 26098866 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26098866 |
Study | Loss-of-function variants in ATM confer risk of gastric cancer. |
Disease/Trait | Gastric adenocarcinoma (histologically verified) |
Initial sample | 2,043 European ancestry cases, 202,533 European ancestry controls |
Replication sample | NA |
Region | 20q12 |
Chromosome id | chr20 |
Chromosome position | 41420939 |
Reported gene | CHD6 |
Mapped gene | CHD6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 84181 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs55864139-A |
SNPs | rs55864139 |
Merged | |
SNP id current | 55864139 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.0029 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 3.12 |
%95 Ci | [1.9-5.11] |
Platform | Illumina [~ 25000000] (imputed) |
CNV | N |
Mapped trait | gastric adenocarcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000503 |
Study accession | GCST002990 |