SNP Detail For rs55864139
1.Mapping Information
Human SNP ID rs55864139
Human chromosome chr20
Human SNP position 41420939
Pig chromosome chr17
Pig SNP position 49518752
2.Annotation Information
PubMed ID26098866
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26098866
StudyLoss-of-function variants in ATM confer risk of gastric cancer.
Disease/TraitGastric adenocarcinoma (histologically verified)
Initial sample2,043 European ancestry cases, 202,533 European ancestry controls
Replication sampleNA
Region20q12
Chromosome idchr20
Chromosome position41420939
Reported geneCHD6
Mapped geneCHD6
Upstream gene id
Downstream gene id
SNP gene ids84181
Upstream gene distance
Downstream gene distance
SNP risk allelers55864139-A
SNPsrs55864139
Merged
SNP id current55864139
Contextmissense_variant
Intergenic0
Allele frequency0.0029
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta3.12
%95 Ci[1.9-5.11]
PlatformIllumina [~ 25000000] (imputed)
CNVN
Mapped traitgastric adenocarcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000503
Study accessionGCST002990