SNP Detail For rs558133
1.Mapping Information
Human SNP ID rs558133
Human chromosome chr5
Human SNP position 79129365
Pig chromosome chr2
Pig SNP position 89409177
2.Annotation Information
PubMed ID25343990
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25343990
StudyGenome-wide association study of selenium concentrations.
Disease/TraitBlood and toenail selenium levels
Initial sample9,639 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79129365
Reported geneBHMT2, JMY, BHMT
Mapped geneBHMT
Upstream gene id
Downstream gene id
SNP gene ids635
Upstream gene distance
Downstream gene distance
SNP risk allelers558133-A
SNPsrs558133
Merged0
SNP id current558133
Contextintron_variant
Intergenic0
Allele frequency0.69
P value0.00000000006
Pvalue mlog10.2218487496163
P value text
Or beta
%95 Ci
PlatformAffymetrix, Illumina [2379663] (imputed)
CNVN
Mapped traitselenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006331
Study accessionGCST002670