Human SNP ID | rs558133 |
---|---|
Human chromosome | chr5 |
Human SNP position | 79129365 |
Pig chromosome | chr2 |
Pig SNP position | 89409177 |
PubMed ID | 25343990 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25343990 |
Study | Genome-wide association study of selenium concentrations. |
Disease/Trait | Blood and toenail selenium levels |
Initial sample | 9,639 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79129365 |
Reported gene | BHMT2, JMY, BHMT |
Mapped gene | BHMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs558133-A |
SNPs | rs558133 |
Merged | 0 |
SNP id current | 558133 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.69 |
P value | 0.00000000006 |
Pvalue mlog | 10.2218487496163 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Illumina [2379663] (imputed) |
CNV | N |
Mapped trait | selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006331 |
Study accession | GCST002670 |