SNP Detail For rs55714927
1.Mapping Information
Human SNP ID rs55714927
Human chromosome chr17
Human SNP position 7176997
Pig chromosome chr3
Pig SNP position 139812680
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region17p13.1
Chromosome idchr17
Chromosome position7176997
Reported geneDLG4
Mapped geneASGR1
Upstream gene id
Downstream gene id
SNP gene ids432
Upstream gene distance
Downstream gene distance
SNP risk allelers55714927-C
SNPsrs55714927
Merged
SNP id current55714927
Contextsynonymous_variant
Intergenic0
Allele frequency0.78
P value0.000000000007
Pvalue mlog11.1549019599857
P value text
Or beta0.057
%95 Ci[0.041-0.073] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitLDL cholesterol
Initial sampleup 62,166 European ancestry individuals
Replication sampleNA
Region17p13.1
Chromosome idchr17
Chromosome position7176997
Reported geneDLG4
Mapped geneASGR1
Upstream gene id
Downstream gene id
SNP gene ids432
Upstream gene distance
Downstream gene distance
SNP risk allelers55714927-C
SNPsrs55714927
Merged
SNP id current55714927
Contextsynonymous_variant
Intergenic0
Allele frequency0.78
P value0.000000000009
Pvalue mlog11.0457574905606
P value text
Or beta0.058
%95 Ci[0.04-0.076] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traitlow density lipoprotein cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004611
Study accessionGCST002898