Human SNP ID | rs55714927 |
---|---|
Human chromosome | chr17 |
Human SNP position | 7176997 |
Pig chromosome | chr3 |
Pig SNP position | 139812680 |
PubMed ID | 25961943 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | Cholesterol, total |
Initial sample | up to 62,166 European ancestry individuals |
Replication sample | NA |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7176997 |
Reported gene | DLG4 |
Mapped gene | ASGR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 432 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs55714927-C |
SNPs | rs55714927 |
Merged | |
SNP id current | 55714927 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000000000007 |
Pvalue mlog | 11.1549019599857 |
P value text | |
Or beta | 0.057 |
%95 Ci | [0.041-0.073] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | total cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004574 |
Study accession | GCST002896 |
PubMed ID | 25961943 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25961943 |
Study | The impact of low-frequency and rare variants on lipid levels. |
Disease/Trait | LDL cholesterol |
Initial sample | up 62,166 European ancestry individuals |
Replication sample | NA |
Region | 17p13.1 |
Chromosome id | chr17 |
Chromosome position | 7176997 |
Reported gene | DLG4 |
Mapped gene | ASGR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 432 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs55714927-C |
SNPs | rs55714927 |
Merged | |
SNP id current | 55714927 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.78 |
P value | 0.000000000009 |
Pvalue mlog | 11.0457574905606 |
P value text | |
Or beta | 0.058 |
%95 Ci | [0.04-0.076] s.d. increase |
Platform | Affymetrix, Illumina, Perlegen [up to 9657952] (imputed) |
CNV | N |
Mapped trait | low density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004611 |
Study accession | GCST002898 |