Human SNP ID | rs55706246 |
---|---|
Human chromosome | chr21 |
Human SNP position | 34223336 |
Pig chromosome | chr13 |
Pig SNP position | 207670382 |
PubMed ID | 26030696 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Percentage gas trapping |
Initial sample | 3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 21q22.11 |
Chromosome id | chr21 |
Chromosome position | 34223336 |
Reported gene | LINC00310 |
Mapped gene | LINC00310 - LOC105372791 |
Upstream gene id | 114036 |
Downstream gene id | 105372791 |
SNP gene ids | |
Upstream gene distance | 33417 |
Downstream gene distance | 129701 |
SNP risk allele | rs55706246-A |
SNPs | rs55706246 |
Merged | |
SNP id current | 55706246 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (All) |
Or beta | 0.28 |
%95 Ci | [-0.0728-0.6328] unit increase |
Platform | Illumina [6900000] (imputed) |
CNV | N |
Mapped trait | gas trapping measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007628 |
Study accession | GCST002942 |
PubMed ID | 26030696 |
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Percentage gas trapping |
Initial sample | 3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 21q22.11 |
Chromosome id | chr21 |
Chromosome position | 34223336 |
Reported gene | LINC00310 |
Mapped gene | LINC00310 - LOC105372791 |
Upstream gene id | 114036 |
Downstream gene id | 105372791 |
SNP gene ids | |
Upstream gene distance | 33417 |
Downstream gene distance | 129701 |
SNP risk allele | rs55706246-A |
SNPs | rs55706246 |
Merged | |
SNP id current | 55706246 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | (All, AA) |
Or beta | 0.45 |
%95 Ci | [0.26-0.64] unit increase |
Platform | Illumina [6900000] (imputed) |
CNV | N |
Mapped trait | gas trapping measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007628 |
Study accession | GCST002942 |
PubMed ID | 26030696 |
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/26030696 |
Study | A Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes. |
Disease/Trait | Percentage gas trapping |
Initial sample | 3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls |
Replication sample | NA |
Region | 21q22.11 |
Chromosome id | chr21 |
Chromosome position | 34223336 |
Reported gene | LINC00310 |
Mapped gene | LINC00310 - LOC105372791 |
Upstream gene id | 114036 |
Downstream gene id | 105372791 |
SNP gene ids | |
Upstream gene distance | 33417 |
Downstream gene distance | 129701 |
SNP risk allele | rs55706246-A |
SNPs | rs55706246 |
Merged | |
SNP id current | 55706246 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (Cases, AA) |
Or beta | |
%95 Ci | |
Platform | Illumina [6900000] (imputed) |
CNV | N |
Mapped trait | gas trapping measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007628 |
Study accession | GCST002942 |