SNP Detail For rs55706246
1.Mapping Information
Human SNP ID rs55706246
Human chromosome chr21
Human SNP position 34223336
Pig chromosome chr13
Pig SNP position 207670382
2.Annotation Information
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitPercentage gas trapping
Initial sample3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region21q22.11
Chromosome idchr21
Chromosome position34223336
Reported geneLINC00310
Mapped geneLINC00310 - LOC105372791
Upstream gene id114036
Downstream gene id105372791
SNP gene ids
Upstream gene distance33417
Downstream gene distance129701
SNP risk allelers55706246-A
SNPsrs55706246
Merged
SNP id current55706246
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000001
Pvalue mlog8
P value text(All)
Or beta0.28
%95 Ci[-0.0728-0.6328] unit increase
PlatformIllumina [6900000] (imputed)
CNVN
Mapped traitgas trapping measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007628
Study accessionGCST002942
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitPercentage gas trapping
Initial sample3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region21q22.11
Chromosome idchr21
Chromosome position34223336
Reported geneLINC00310
Mapped geneLINC00310 - LOC105372791
Upstream gene id114036
Downstream gene id105372791
SNP gene ids
Upstream gene distance33417
Downstream gene distance129701
SNP risk allelers55706246-A
SNPsrs55706246
Merged
SNP id current55706246
Contextintron_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text(All, AA)
Or beta0.45
%95 Ci[0.26-0.64] unit increase
PlatformIllumina [6900000] (imputed)
CNVN
Mapped traitgas trapping measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007628
Study accessionGCST002942
PubMed ID26030696
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/26030696
StudyA Genome-wide Association Study of Emphysema and Airway Quantitative Imaging Phenotypes.
Disease/TraitPercentage gas trapping
Initial sample3,243 European ancestry chronic obstructive pulmonary disease cases, 901 African American chronic obstructive pulmonary disease cases, 3,062 European ancestry controls, 2,132 African American controls
Replication sampleNA
Region21q22.11
Chromosome idchr21
Chromosome position34223336
Reported geneLINC00310
Mapped geneLINC00310 - LOC105372791
Upstream gene id114036
Downstream gene id105372791
SNP gene ids
Upstream gene distance33417
Downstream gene distance129701
SNP risk allelers55706246-A
SNPsrs55706246
Merged
SNP id current55706246
Contextintron_variant
Intergenic1
Allele frequency
P value0.0000003
Pvalue mlog6.52287874528033
P value text(Cases, AA)
Or beta
%95 Ci
PlatformIllumina [6900000] (imputed)
CNVN
Mapped traitgas trapping measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007628
Study accessionGCST002942