Human SNP ID | rs55705857 |
---|---|
Human chromosome | chr8 |
Human SNP position | 129633446 |
Pig chromosome | chr4 |
Pig SNP position | 11139096 |
PubMed ID | 26424050 |
---|---|
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Glioma |
Initial sample | 1,783 Northern European ancestry glioblastoma cases, 2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls |
Replication sample | 1,490 European ancestry cases, 1,723 European ancestry control |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129633446 |
Reported gene | NR |
Mapped gene | CCDC26 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 137196 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs55705857-G |
SNPs | rs55705857 |
Merged | |
SNP id current | 55705857 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 6E-37 |
Pvalue mlog | 36.2218487496163 |
P value text | |
Or beta | 2.19 |
%95 Ci | [1.94-2.47] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST003228 |
PubMed ID | 26424050 |
Journal | Nat Commun |
Link | www.ncbi.nlm.nih.gov/pubmed/26424050 |
Study | Genome-wide association study identifies multiple susceptibility loci for glioma. |
Disease/Trait | Non-glioblastoma glioma |
Initial sample | 2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls |
Replication sample | up to 1,490 European ancestry cases, up to 1,723 European ancestry controls |
Region | 8q24.21 |
Chromosome id | chr8 |
Chromosome position | 129633446 |
Reported gene | NR |
Mapped gene | CCDC26 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 137196 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs55705857-G |
SNPs | rs55705857 |
Merged | |
SNP id current | 55705857 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 1E-62 |
Pvalue mlog | 62 |
P value text | |
Or beta | 3.6 |
%95 Ci | [3.10-4.19] |
Platform | Illumina [at least 8427548] (imputed) |
CNV | N |
Mapped trait | central nervous system cancer |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000326 |
Study accession | GCST003227 |