SNP Detail For rs55705857
1.Mapping Information
Human SNP ID rs55705857
Human chromosome chr8
Human SNP position 129633446
Pig chromosome chr4
Pig SNP position 11139096
2.Annotation Information
PubMed ID26424050
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26424050
StudyGenome-wide association study identifies multiple susceptibility loci for glioma.
Disease/TraitGlioma
Initial sample1,783 Northern European ancestry glioblastoma cases, 2,364 Northern European ancestry non-glioblastoma cases, 7,435 Northern European ancestry controls
Replication sample1,490 European ancestry cases, 1,723 European ancestry control
Region8q24.21
Chromosome idchr8
Chromosome position129633446
Reported geneNR
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers55705857-G
SNPsrs55705857
Merged
SNP id current55705857
Contextintron_variant
Intergenic0
Allele frequencyNR
P value6E-37
Pvalue mlog36.2218487496163
P value text
Or beta2.19
%95 Ci[1.94-2.47]
PlatformIllumina [at least 8427548] (imputed)
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST003228
PubMed ID26424050
JournalNat Commun
Linkwww.ncbi.nlm.nih.gov/pubmed/26424050
StudyGenome-wide association study identifies multiple susceptibility loci for glioma.
Disease/TraitNon-glioblastoma glioma
Initial sample2,364 Northern European ancestry cases, 7,435 Northern European ancestry controls
Replication sampleup to 1,490 European ancestry cases, up to 1,723 European ancestry controls
Region8q24.21
Chromosome idchr8
Chromosome position129633446
Reported geneNR
Mapped geneCCDC26
Upstream gene id
Downstream gene id
SNP gene ids137196
Upstream gene distance
Downstream gene distance
SNP risk allelers55705857-G
SNPsrs55705857
Merged
SNP id current55705857
Contextintron_variant
Intergenic0
Allele frequencyNR
P value1E-62
Pvalue mlog62
P value text
Or beta3.6
%95 Ci[3.10-4.19]
PlatformIllumina [at least 8427548] (imputed)
CNVN
Mapped traitcentral nervous system cancer
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000326
Study accessionGCST003227