SNP Detail For rs55649657
1.Mapping Information
Human SNP ID rs55649657
Human chromosome chr7
Human SNP position 21567665
Pig chromosome chr9
Pig SNP position 99866313
2.Annotation Information
PubMed ID25961943
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25961943
StudyThe impact of low-frequency and rare variants on lipid levels.
Disease/TraitCholesterol, total
Initial sampleup to 62,166 European ancestry individuals
Replication sampleNA
Region7p15.3
Chromosome idchr7
Chromosome position21567665
Reported geneDNAH11
Mapped geneLOC105375183, DNAH11
Upstream gene id
Downstream gene id
SNP gene ids105375183, 8701
Upstream gene distance
Downstream gene distance
SNP risk allelers55649657-G
SNPsrs55649657
Merged
SNP id current55649657
Contextintron_variant
Intergenic0
Allele frequency0.21
P value0.0000000000004
Pvalue mlog12.397940008672
P value text
Or beta0.052
%95 Ci[0.038-0.066] s.d. increase
PlatformAffymetrix, Illumina, Perlegen [up to 9657952] (imputed)
CNVN
Mapped traittotal cholesterol measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004574
Study accessionGCST002896