Human SNP ID | rs5498 |
---|---|
Human chromosome | chr19 |
Human SNP position | 10285007 |
Pig chromosome | chr2 |
Pig SNP position | 69441003 |
PubMed ID | 18604267 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18604267 |
Study | Novel association of ABO histo-blood group antigen with soluble ICAM-1: results of a genome-wide association study of 6,578 women. |
Disease/Trait | Soluble ICAM-1 |
Initial sample | 4,570 European ancestry female individuals |
Replication sample | 2,008 European ancestry female individuals |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10285007 |
Reported gene | ICAM1 |
Mapped gene | ICAM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3383 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5498-A |
SNPs | rs5498 |
Merged | 0 |
SNP id current | 5498 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 5E-25 |
Pvalue mlog | 24.3010299956639 |
P value text | |
Or beta | 13.22 |
%95 Ci | [NR] umol/L increase |
Platform | Illumina [336108] |
CNV | N |
Mapped trait | ICAM-1 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004520 |
Study accession | GCST000210 |
PubMed ID | 21533024 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21533024 |
Study | Genome-wide association analysis of soluble ICAM-1 concentration reveals novel associations at the NFKBIK, PNPLA3, RELA, and SH2B3 loci. |
Disease/Trait | Soluble ICAM-1 |
Initial sample | 22,435 European ancestry female individuals |
Replication sample | 9,813 individuals |
Region | 19p13.2 |
Chromosome id | chr19 |
Chromosome position | 10285007 |
Reported gene | ICAM1 |
Mapped gene | ICAM1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 3383 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5498-G |
SNPs | rs5498 |
Merged | 0 |
SNP id current | 5498 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.43 |
P value | 6E-89 |
Pvalue mlog | 88.2218487496163 |
P value text | |
Or beta | 13.8 |
%95 Ci | [NR] ng/mL increase |
Platform | Illumina [334295] |
CNV | N |
Mapped trait | ICAM-1 measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004520 |
Study accession | GCST001047 |