Human SNP ID | rs549280 |
---|---|
Human chromosome | chr4 |
Human SNP position | 74105479 |
Pig chromosome | chr8 |
Pig SNP position | 74286291 |
PubMed ID | 25096241 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
Disease/Trait | White blood cell count |
Initial sample | 16,843 Japanese ancestry individuals, 19,509 European ancestry individuals, 16,388 African American individuals |
Replication sample | NA |
Region | 4q13.3 |
Chromosome id | chr4 |
Chromosome position | 74105479 |
Reported gene | NR |
Mapped gene | CXCL2 - MTHFD2L |
Upstream gene id | 2920 |
Downstream gene id | 441024 |
SNP gene ids | |
Upstream gene distance | 6199 |
Downstream gene distance | 8704 |
SNP risk allele | rs549280-? |
SNPs | rs549280 |
Merged | 0 |
SNP id current | 549280 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000000004 |
Pvalue mlog | 9.39794000867203 |
P value text | |
Or beta | 0.011 |
%95 Ci | [0.0075-0.0145] unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | leukocyte count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004308 |
Study accession | GCST002556 |
PubMed ID | 25096241 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25096241 |
Study | Trans-ethnic meta-analysis of white blood cell phenotypes. |
Disease/Trait | Neutrophil count |
Initial sample | 9,802 Japanese ancestry individuals, 16,550 European ancestry individuals, 7,391 African American individuals |
Replication sample | NA |
Region | 4q13.3 |
Chromosome id | chr4 |
Chromosome position | 74105479 |
Reported gene | NR |
Mapped gene | CXCL2 - MTHFD2L |
Upstream gene id | 2920 |
Downstream gene id | 441024 |
SNP gene ids | |
Upstream gene distance | 6199 |
Downstream gene distance | 8704 |
SNP risk allele | rs549280-? |
SNPs | rs549280 |
Merged | 0 |
SNP id current | 549280 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 0.0204 |
%95 Ci | [0.012-0.029] unit decrease |
Platform | Illumina [NR] (imputed) |
CNV | N |
Mapped trait | neutrophil count |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004833 |
Study accession | GCST002557 |