Human SNP ID | rs541862 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31949174 |
Pig chromosome | chr7 |
Pig SNP position | 27774674 |
PubMed ID | 22694956 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22694956 |
Study | Genome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3. |
Disease/Trait | Age-related macular degeneration |
Initial sample | 893 European ancestry cases, 2,199 European ancestry controls |
Replication sample | 1,411 European ancestry cases, 1,431 European ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31949174 |
Reported gene | CFB |
Mapped gene | CFB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 629 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs541862-T |
SNPs | rs541862 |
Merged | 0 |
SNP id current | 541862 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.99 |
P value | 0.00000000000000009 |
Pvalue mlog | 16.0457574905606 |
P value text | |
Or beta | 1.89 |
%95 Ci | [1.61-2.17] |
Platform | Illumina [2272849] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001571 |