SNP Detail For rs541862
1.Mapping Information
Human SNP ID rs541862
Human chromosome chr6
Human SNP position 31949174
Pig chromosome chr7
Pig SNP position 27774674
2.Annotation Information
PubMed ID22694956
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22694956
StudyGenome-wide association study of age-related macular degeneration identifies associated variants in the TNXB-FKBPL-NOTCH4 region of chromosome 6p21.3.
Disease/TraitAge-related macular degeneration
Initial sample893 European ancestry cases, 2,199 European ancestry controls
Replication sample1,411 European ancestry cases, 1,431 European ancestry controls
Region6p21.33
Chromosome idchr6
Chromosome position31949174
Reported geneCFB
Mapped geneCFB
Upstream gene id
Downstream gene id
SNP gene ids629
Upstream gene distance
Downstream gene distance
SNP risk allelers541862-T
SNPsrs541862
Merged0
SNP id current541862
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.99
P value0.00000000000000009
Pvalue mlog16.0457574905606
P value text
Or beta1.89
%95 Ci[1.61-2.17]
PlatformIllumina [2272849] (imputed)
CNVN
Mapped traitage-related macular degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001365
Study accessionGCST001571