Human SNP ID | rs536477 |
---|---|
Human chromosome | chr1 |
Human SNP position | 239882608 |
Pig chromosome | chr14 |
Pig SNP position | 55333774 |
PubMed ID | 23509962 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23509962 |
Study | A genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis. |
Disease/Trait | Venous thromboembolism (SNP x SNP interaction) |
Initial sample | 411 European ancestry cases, 1,228 European ancestry controls |
Replication sample | 1,542 European ancestry cases, 1,110 European ancestry controls |
Region | 1q43 x 10p15.1 |
Chromosome id | chr1 x 10 |
Chromosome position | 239882608 x 5119763 |
Reported gene | NR x NR |
Mapped gene | CHRM3 x AKR1C3 - LOC105376377 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs536477-? x rs1937920-? |
SNPs | rs536477 x rs1937920 |
Merged | 0 |
SNP id current | |
Context | intron_variant x downstream_gene_variant |
Intergenic | |
Allele frequency | |
P value | 0.000000003 |
Pvalue mlog | 8.52287874528033 |
P value text | |
Or beta | 1.5873 |
%95 Ci | [NR] |
Platform | Illumina [291872] |
CNV | N |
Mapped trait | venous thromboembolism |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004286 |
Study accession | GCST001913 |