SNP Detail For rs531930
1.Mapping Information
Human SNP ID rs531930
Human chromosome chr6
Human SNP position 124422361
Pig chromosome chr1
Pig SNP position 42522493
2.Annotation Information
PubMed ID24999842
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24999842
StudyGenome-wide association study of celiac disease in North America confirms FRMD4B as new celiac locus.
Disease/TraitCeliac disease
Initial sample1,550 European ancestry cases, 3,084 European ancestry controls
Replication sampleNA
Region6q22.31
Chromosome idchr6
Chromosome position124422361
Reported geneNKAIN2
Mapped geneNKAIN2
Upstream gene id
Downstream gene id
SNP gene ids154215
Upstream gene distance
Downstream gene distance
SNP risk allelers531930-?
SNPsrs531930
Merged0
SNP id current531930
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000005
Pvalue mlog6.30102999566398
P value text
Or beta1.3
%95 Ci[1.17鈥?.44]
PlatformIllumina [517345]
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST002520