SNP Detail For rs531676
1.Mapping Information
Human SNP ID rs531676
Human chromosome chr10
Human SNP position 97877821
Pig chromosome JH118839-1
Pig SNP position 128304
2.Annotation Information
PubMed ID20694148
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20694148
StudyA genome-wide association study of the metabolic syndrome in Indian Asian men.
Disease/TraitMetabolic syndrome
Initial sample2,554 Indian Asian ancestry individuals
Replication sample2,240 Indian Asian ancestry individuals
Region10q24.2
Chromosome idchr10
Chromosome position97877821
Reported geneCRTAC1
Mapped geneCRTAC1
Upstream gene id
Downstream gene id
SNP gene ids55118
Upstream gene distance
Downstream gene distance
SNP risk allelers531676-?
SNPsrs531676
Merged0
SNP id current531676
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.000009
Pvalue mlog5.04575749056067
P value text(T2D)
Or beta
%95 Ci
PlatformIllumina [308011]
CNVN
Mapped traittype II diabetes mellitus, metabolic syndrome
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001360, http://www.ebi.ac.uk/efo/EFO_0000195
Study accessionGCST000753