SNP Detail For rs527616
1.Mapping Information
Human SNP ID rs527616
Human chromosome chr18
Human SNP position 26757460
Pig chromosome chr6
Pig SNP position 104261701
2.Annotation Information
PubMed ID23535729
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23535729
StudyLarge-scale genotyping identifies 41 new loci associated with breast cancer risk.
Disease/TraitBreast cancer
Initial sample10,052 European ancestry cases, 12,575 European ancestry controls
Replication sample45,290 European ancestry cases, 41,880 European ancestry controls
Region18q11.2
Chromosome idchr18
Chromosome position26757460
Reported geneintergenic
Mapped geneLOC101927652 - LOC105372035
Upstream gene id101927652
Downstream gene id105372035
SNP gene ids
Upstream gene distance15344
Downstream gene distance64882
SNP risk allelers527616-G
SNPsrs527616
Merged0
SNP id current527616
Contextintron_variant
Intergenic1
Allele frequency0.62
P value0.0000000002
Pvalue mlog9.69897000433601
P value text
Or beta1.05
%95 Ci[1.03-1.08]
PlatformAffymetrix, Illumina [~ 2600000] (imputed)
CNVN
Mapped traitbreast carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000305
Study accessionGCST001937