SNP Detail For rs527589
1.Mapping Information
Human SNP ID rs527589
Human chromosome chr11
Human SNP position 77443594
Pig chromosome chr9
Pig SNP position 13092017
2.Annotation Information
PubMed ID22419666
JournalAm J Med Genet A
Linkwww.ncbi.nlm.nih.gov/pubmed/22419666
StudyGenome wide study of maternal and parent-of-origin effects on the etiology of orofacial clefts.
Disease/TraitOrofacial clefts
Initial sample1,094 European ancestry triads, 1,277 Asian ancestry triads, 87 triads
Replication sampleNA
Region11q14.1
Chromosome idchr11
Chromosome position77443594
Reported geneNR
Mapped genePAK1
Upstream gene id
Downstream gene id
SNP gene ids5058
Upstream gene distance
Downstream gene distance
SNP risk allelers527589-?
SNPsrs527589
Merged0
SNP id current527589
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000003
Pvalue mlog5.52287874528033
P value text(CL_CLP)
Or beta1.75
%95 Ci[1.37-2.22]
PlatformIllumina [NR]
CNVN
Mapped traitOrofacial clefting syndrome
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_139039
Study accessionGCST001442