Human SNP ID | rs523096 |
---|---|
Human chromosome | chr9 |
Human SNP position | 22019130 |
Pig chromosome | chr1 |
Pig SNP position | 223945103 |
PubMed ID | 22792221 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/22792221 |
Study | Common variants on chromosome 9p21 are associated with normal tension glaucoma. |
Disease/Trait | Glaucoma |
Initial sample | 286 Japanese ancestry cases, 557 Japanese ancestry controls |
Replication sample | 334 Japanese ancestry cases, 701 Japanese ancestry controls |
Region | 9p21.3 |
Chromosome id | chr9 |
Chromosome position | 22019130 |
Reported gene | CDKN2BAS, CDK2NA, CDKN2B |
Mapped gene | CDKN2B-AS1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 100048912 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs523096-A |
SNPs | rs523096 |
Merged | 0 |
SNP id current | 523096 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.825 |
P value | 0.00000000005 |
Pvalue mlog | 10.3010299956639 |
P value text | |
Or beta | 2.13 |
%95 Ci | [1.69-2.68] |
Platform | Affymetrix [531009] |
CNV | N |
Mapped trait | glaucoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000516 |
Study accession | GCST001596 |