SNP Detail For rs523096
1.Mapping Information
Human SNP ID rs523096
Human chromosome chr9
Human SNP position 22019130
Pig chromosome chr1
Pig SNP position 223945103
2.Annotation Information
PubMed ID22792221
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/22792221
StudyCommon variants on chromosome 9p21 are associated with normal tension glaucoma.
Disease/TraitGlaucoma
Initial sample286 Japanese ancestry cases, 557 Japanese ancestry controls
Replication sample334 Japanese ancestry cases, 701 Japanese ancestry controls
Region9p21.3
Chromosome idchr9
Chromosome position22019130
Reported geneCDKN2BAS, CDK2NA, CDKN2B
Mapped geneCDKN2B-AS1
Upstream gene id
Downstream gene id
SNP gene ids100048912
Upstream gene distance
Downstream gene distance
SNP risk allelers523096-A
SNPsrs523096
Merged0
SNP id current523096
Contextintron_variant
Intergenic0
Allele frequency0.825
P value0.00000000005
Pvalue mlog10.3010299956639
P value text
Or beta2.13
%95 Ci[1.69-2.68]
PlatformAffymetrix [531009]
CNVN
Mapped traitglaucoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000516
Study accessionGCST001596