Human SNP ID | rs522162 |
---|---|
Human chromosome | chr6 |
Human SNP position | 31952140 |
Pig chromosome | chr7 |
Pig SNP position | 27771620 |
PubMed ID | 23577725 |
---|---|
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23577725 |
Study | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
Disease/Trait | Age-related macular degeneration |
Initial sample | 1,207 European ancestry cases, 686 European ancestry controls |
Replication sample | 122 European ancestry cases, 86 European ancestry controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31952140 |
Reported gene | RDBP, CFB, ATF6B, STK19 |
Mapped gene | NELFE |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7936 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs522162-? |
SNPs | rs522162 |
Merged | 0 |
SNP id current | 522162 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.93 |
P value | 0.0000000002 |
Pvalue mlog | 9.69897000433601 |
P value text | |
Or beta | 2.33 |
%95 Ci | [1.82-3.03] |
Platform | Affymetrix [2543887] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001986 |
PubMed ID | 23577725 |
Journal | Ann Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23577725 |
Study | Genetic factors in nonsmokers with age-related macular degeneration revealed through genome-wide gene-environment interaction analysis. |
Disease/Trait | Age-related macular degeneration (extreme sampling) |
Initial sample | 720 European ancestry grade 5 cases, 513 European ancestry grade 1 controls |
Replication sample | 70 European ancestry grade 5 cases, 73 European ancestry grade 1 controls |
Region | 6p21.33 |
Chromosome id | chr6 |
Chromosome position | 31952140 |
Reported gene | RDBP, CFB, DKFZp779M0311 |
Mapped gene | NELFE |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 7936 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs522162-? |
SNPs | rs522162 |
Merged | 0 |
SNP id current | 522162 |
Context | 3_prime_UTR_variant |
Intergenic | 0 |
Allele frequency | 0.93 |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | |
Or beta | 2.38 |
%95 Ci | [1.69-3.33] |
Platform | Affymetrix [2543887] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365 |
Study accession | GCST001987 |