SNP Detail For rs520885
1.Mapping Information
Human SNP ID rs520885
Human chromosome chr1
Human SNP position 93055535
Pig chromosome chr4
Pig SNP position 135761862
2.Annotation Information
PubMed ID26545630
JournalNeurobiol Aging
Linkwww.ncbi.nlm.nih.gov/pubmed/26545630
StudyA potential endophenotype for Alzheimer__s disease: cerebrospinal fluid clusterin.
Disease/TraitPlasma clusterin levels
Initial sample521 Alzheimer__s disease cases, 297 controls
Replication sampleNA
Region1p22.1
Chromosome idchr1
Chromosome position93055535
Reported geneMTF2
Mapped geneFAM69A - MTF2
Upstream gene id388650
Downstream gene id22823
SNP gene ids
Upstream gene distance94013
Downstream gene distance23700
SNP risk allelers520885-?
SNPsrs520885
Merged
SNP id current520885
Contextintergenic_variant
Intergenic1
Allele frequency
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta
%95 Ci
PlatformIllumina [5970354] (imputed)
CNVN
Mapped traitplasma clusterin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007656
Study accessionGCST003133