Human SNP ID | rs518167 |
---|---|
Human chromosome | chr11 |
Human SNP position | 88934972 |
Pig chromosome | chr9 |
Pig SNP position | 24799456 |
PubMed ID | 24532677 |
---|---|
Journal | Ann Rheum Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/24532677 |
Study | A genome-wide association study of rheumatoid arthritis without antibodies against citrullinated peptides. |
Disease/Trait | Rheumatoid arthritis (ACPA-negative) |
Initial sample | 1,148 European ancestry cases, 6,008 European ancestry controls |
Replication sample | 774 European ancestry cases, 1,079 European ancestry controls |
Region | 11q14.3 |
Chromosome id | chr11 |
Chromosome position | 88934972 |
Reported gene | GRM5 |
Mapped gene | GRM5 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 2915 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs518167-? |
SNPs | rs518167 |
Merged | 0 |
SNP id current | 518167 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 2.24 |
%95 Ci | [NR] |
Platform | Illumina [452367] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002357 |