SNP Detail For rs514475
1.Mapping Information
Human SNP ID rs514475
Human chromosome chr6
Human SNP position 137717768
Pig chromosome chr1
Pig SNP position 29927008
2.Annotation Information
PubMed ID25574825
JournalAm J Hum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25574825
StudyGenome-wide Comparative Analysis of Atopic Dermatitis and Psoriasis Gives Insight into Opposing Genetic Mechanisms.
Disease/TraitInflammatory skin disease
Initial sample2,079 European ancestry atopic dermatitis cases, 4,212 European ancestry psoriasis cases, 11,899 European ancestry controls
Replication sampleNA
Region6q23.3
Chromosome idchr6
Chromosome position137717768
Reported geneAL357060.1
Mapped geneLOC442263 - LOC100507406
Upstream gene id442263
Downstream gene id100507406
SNP gene ids
Upstream gene distance10548
Downstream gene distance12402
SNP risk allelers514475-?
SNPsrs514475
Merged0
SNP id current514475
Contextintron_variant
Intergenic1
Allele frequencyNR
P value0.00000006
Pvalue mlog7.22184874961635
P value text(Psoriasis)
Or beta
%95 Ci
PlatformAffymetrix, Illumina [~ 5200000]
CNVN
Mapped traitpsoriasis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000676
Study accessionGCST002740