Human SNP ID | rs514341 |
---|---|
Human chromosome | chr1 |
Human SNP position | 110110258 |
Pig chromosome | chr4 |
Pig SNP position | 120478800 |
PubMed ID | 24962325 |
---|---|
Journal | Drug Alcohol Depend |
Link | www.ncbi.nlm.nih.gov/pubmed/24962325 |
Study | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. |
Disease/Trait | Alcohol dependence (age at onset) |
Initial sample | 685 European ancestry cases, 1,103 European ancestry controls from 118 families |
Replication sample | NA |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 110110258 |
Reported gene | NR |
Mapped gene | LINC01397 - UBL4B |
Upstream gene id | 104355139 |
Downstream gene id | 164153 |
SNP gene ids | |
Upstream gene distance | 539 |
Downstream gene distance | 2182 |
SNP risk allele | rs514341-T |
SNPs | rs514341 |
Merged | 0 |
SNP id current | 514341 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.08 |
P value | 0.000006 |
Pvalue mlog | 5.22184874961635 |
P value text | |
Or beta | 1.5 |
%95 Ci | [1.32-1.68] |
Platform | Illumina [4058415] (imputed) |
CNV | N |
Mapped trait | age at onset, alcohol dependence |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829 |
Study accession | GCST002477 |