SNP Detail For rs514341
1.Mapping Information
Human SNP ID rs514341
Human chromosome chr1
Human SNP position 110110258
Pig chromosome chr4
Pig SNP position 120478800
2.Annotation Information
PubMed ID24962325
JournalDrug Alcohol Depend
Linkwww.ncbi.nlm.nih.gov/pubmed/24962325
StudyGenome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.
Disease/TraitAlcohol dependence (age at onset)
Initial sample685 European ancestry cases, 1,103 European ancestry controls from 118 families
Replication sampleNA
Region1p13.3
Chromosome idchr1
Chromosome position110110258
Reported geneNR
Mapped geneLINC01397 - UBL4B
Upstream gene id104355139
Downstream gene id164153
SNP gene ids
Upstream gene distance539
Downstream gene distance2182
SNP risk allelers514341-T
SNPsrs514341
Merged0
SNP id current514341
Contextupstream_gene_variant
Intergenic1
Allele frequency0.08
P value0.000006
Pvalue mlog5.22184874961635
P value text
Or beta1.5
%95 Ci[1.32-1.68]
PlatformIllumina [4058415] (imputed)
CNVN
Mapped traitage at onset, alcohol dependence
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004847, http://www.ebi.ac.uk/efo/EFO_0003829
Study accessionGCST002477