SNP Detail For rs508487
1.Mapping Information
Human SNP ID rs508487
Human chromosome chr11
Human SNP position 117204850
Pig chromosome chr9
Pig SNP position 49636757
2.Annotation Information
PubMed ID21943158
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21943158
StudyGenetic variants in LPL, OASL and TOMM40/APOE-C1-C2-C4 genes are associated with multiple cardiovascular-related traits.
Disease/TraitCardiovascular disease risk factors
Initial sample11,683 European ancestry individuals
Replication sampleNA
Region11q23.3
Chromosome idchr11
Chromosome position117204850
Reported genePCSK7
Mapped geneTAGLN - PCSK7
Upstream gene id6876
Downstream gene id9159
SNP gene ids
Upstream gene distance58
Downstream gene distance221
SNP risk allelers508487-T
SNPsrs508487
Merged0
SNP id current508487
Context3_prime_UTR_variant
Intergenic1
Allele frequency0.04
P value0.0000000002
Pvalue mlog9.69897000433601
P value text(TRIG)
Or beta0.235
%95 Ci[0.16-0.31] mmol/l increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST001247