Human SNP ID | rs506500 |
---|---|
Human chromosome | chr5 |
Human SNP position | 79118514 |
Pig chromosome | chr2 |
Pig SNP position | 89419841 |
PubMed ID | 23720494 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23720494 |
Study | Genome-wide association study identifies loci affecting blood copper, selenium and zinc. |
Disease/Trait | Blood trace element (Se levels) |
Initial sample | 5477 European ancestry individuals |
Replication sample | NA |
Region | 5q14.1 |
Chromosome id | chr5 |
Chromosome position | 79118514 |
Reported gene | BHMT2, BHMT, DMGDH |
Mapped gene | BHMT |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs506500-? |
SNPs | rs506500 |
Merged | 0 |
SNP id current | 506500 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000008 |
Pvalue mlog | 11.096910013008 |
P value text | (Conditioned on rs921943) |
Or beta | |
%95 Ci | |
Platform | Illumina [> 2500000] (imputed) |
CNV | N |
Mapped trait | serum selenium measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005266 |
Study accession | GCST002039 |