SNP Detail For rs506500
1.Mapping Information
Human SNP ID rs506500
Human chromosome chr5
Human SNP position 79118514
Pig chromosome chr2
Pig SNP position 89419841
2.Annotation Information
PubMed ID23720494
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23720494
StudyGenome-wide association study identifies loci affecting blood copper, selenium and zinc.
Disease/TraitBlood trace element (Se levels)
Initial sample5477 European ancestry individuals
Replication sampleNA
Region5q14.1
Chromosome idchr5
Chromosome position79118514
Reported geneBHMT2, BHMT, DMGDH
Mapped geneBHMT
Upstream gene id
Downstream gene id
SNP gene ids635
Upstream gene distance
Downstream gene distance
SNP risk allelers506500-?
SNPsrs506500
Merged0
SNP id current506500
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000000000008
Pvalue mlog11.096910013008
P value text(Conditioned on rs921943)
Or beta
%95 Ci
PlatformIllumina [> 2500000] (imputed)
CNVN
Mapped traitserum selenium measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005266
Study accessionGCST002039