Human SNP ID | rs501631 |
---|---|
Human chromosome | chr9 |
Human SNP position | 3943125 |
Pig chromosome | chr1 |
Pig SNP position | 243864827 |
PubMed ID | 25599974 |
---|---|
Journal | Genet Epidemiol |
Link | www.ncbi.nlm.nih.gov/pubmed/25599974 |
Study | A Genome-Wide Association Study of Early Spontaneous Preterm Delivery. |
Disease/Trait | Spontaneous preterm birth (preterm delivery) |
Initial sample | 935 pre-term delivery mothers, 946 term delivery mothers |
Replication sample | 66 European ancestry pre-term delivery mothers, 110 African American pre-term delivery mothers, 110 Hispanic pre-term delivery mothers, 7 pre-term delivery mothers, 37 European ancestry term delivery mothers, 84 African American term delivery mothers, 74 |
Region | 9p24.2 |
Chromosome id | chr9 |
Chromosome position | 3943125 |
Reported gene | GLIS3 |
Mapped gene | GLIS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 169792 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs501631-T |
SNPs | rs501631 |
Merged | 0 |
SNP id current | 501631 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.48 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | |
Or beta | 1.33 |
%95 Ci | [NR] |
Platform | Affymetrix [779326] |
CNV | N |
Mapped trait | delivery measurement, spontaneous preterm birth |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0006922, http://www.ebi.ac.uk/efo/EFO_0006917 |
Study accession | GCST002752 |