SNP Detail For rs501631
1.Mapping Information
Human SNP ID rs501631
Human chromosome chr9
Human SNP position 3943125
Pig chromosome chr1
Pig SNP position 243864827
2.Annotation Information
PubMed ID25599974
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/25599974
StudyA Genome-Wide Association Study of Early Spontaneous Preterm Delivery.
Disease/TraitSpontaneous preterm birth (preterm delivery)
Initial sample935 pre-term delivery mothers, 946 term delivery mothers
Replication sample66 European ancestry pre-term delivery mothers, 110 African American pre-term delivery mothers, 110 Hispanic pre-term delivery mothers, 7 pre-term delivery mothers, 37 European ancestry term delivery mothers, 84 African American term delivery mothers, 74
Region9p24.2
Chromosome idchr9
Chromosome position3943125
Reported geneGLIS3
Mapped geneGLIS3
Upstream gene id
Downstream gene id
SNP gene ids169792
Upstream gene distance
Downstream gene distance
SNP risk allelers501631-T
SNPsrs501631
Merged0
SNP id current501631
Contextintron_variant
Intergenic0
Allele frequency0.48
P value0.000007
Pvalue mlog5.15490195998574
P value text
Or beta1.33
%95 Ci[NR]
PlatformAffymetrix [779326]
CNVN
Mapped traitdelivery measurement, spontaneous preterm birth
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006922, http://www.ebi.ac.uk/efo/EFO_0006917
Study accessionGCST002752