SNP Detail For rs501344
1.Mapping Information
Human SNP ID rs501344
Human chromosome chr8
Human SNP position 102102345
Pig chromosome chr4
Pig SNP position 37851665
2.Annotation Information
PubMed ID26112879
JournalJ Nutrigenet Nutrigenomics
Linkwww.ncbi.nlm.nih.gov/pubmed/26112879
StudyInteraction between Common Genetic Variants and Total Fat Intake on Low-Density Lipoprotein Peak Particle Diameter: A Genome-Wide Association Study.
Disease/TraitLDL peak particle diameter (total fat intake interaction)
Initial sample541 European ancestry individuals
Replication sampleNA
Region8q22.3
Chromosome idchr8
Chromosome position102102345
Reported geneNCALD
Mapped geneNCALD
Upstream gene id
Downstream gene id
SNP gene ids83988
Upstream gene distance
Downstream gene distance
SNP risk allelers501344-A
SNPsrs501344
Merged
SNP id current501344
Contextintron_variant
Intergenic0
Allele frequency0.4
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta0.03
%95 Ci[0.01-0.05] unit decrease
PlatformIllumina [1632371] (imputed)
CNVN
Mapped traitLDL peak particle diameter measurement, total fat intake measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0007677, http://www.ebi.ac.uk/efo/EFO_0007678
Study accessionGCST002989