Human SNP ID | rs5006884 |
---|---|
Human chromosome | chr11 |
Human SNP position | 5352021 |
Pig chromosome | chr9 |
Pig SNP position | 5691207 |
PubMed ID | 20018918 |
---|---|
Journal | Blood |
Link | www.ncbi.nlm.nih.gov/pubmed/20018918 |
Study | Fetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5__ olfactory receptor gene cluster. |
Disease/Trait | Fetal hemoglobin levels |
Initial sample | 848 Black cases |
Replication sample | 305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases |
Region | 11p15.4 |
Chromosome id | chr11 |
Chromosome position | 5352021 |
Reported gene | OR51B5, OR51B6 |
Mapped gene | OR51B5, OR51B6 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 282763, 390058 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs5006884-A |
SNPs | rs5006884 |
Merged | 0 |
SNP id current | 5006884 |
Context | missense_variant |
Intergenic | 0 |
Allele frequency | 0.25 |
P value | 0.00000003 |
Pvalue mlog | 7.52287874528033 |
P value text | (African) |
Or beta | 0.16 |
%95 Ci | [NR] unit increase |
Platform | Illumina [~ 600000] |
CNV | N |
Mapped trait | fetal hemoglobin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004576 |
Study accession | GCST000545 |