SNP Detail For rs5006884
1.Mapping Information
Human SNP ID rs5006884
Human chromosome chr11
Human SNP position 5352021
Pig chromosome chr9
Pig SNP position 5691207
2.Annotation Information
PubMed ID20018918
JournalBlood
Linkwww.ncbi.nlm.nih.gov/pubmed/20018918
StudyFetal hemoglobin in sickle cell anemia: genome-wide association studies suggest a regulatory region in the 5__ olfactory receptor gene cluster.
Disease/TraitFetal hemoglobin levels
Initial sample848 Black cases
Replication sample305 Black cases, 406 Chinese ancestry cases, 113 Thai ancestry cases
Region11p15.4
Chromosome idchr11
Chromosome position5352021
Reported geneOR51B5, OR51B6
Mapped geneOR51B5, OR51B6
Upstream gene id
Downstream gene id
SNP gene ids282763, 390058
Upstream gene distance
Downstream gene distance
SNP risk allelers5006884-A
SNPsrs5006884
Merged0
SNP id current5006884
Contextmissense_variant
Intergenic0
Allele frequency0.25
P value0.00000003
Pvalue mlog7.52287874528033
P value text(African)
Or beta0.16
%95 Ci[NR] unit increase
PlatformIllumina [~ 600000]
CNVN
Mapped traitfetal hemoglobin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004576
Study accessionGCST000545