Human SNP ID | rs4985167 |
---|---|
Human chromosome | chr16 |
Human SNP position | 14989008 |
Pig chromosome | chr6 |
Pig SNP position | 65888375 |
PubMed ID | 21829377 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 16p13.11 |
Chromosome id | chr16 |
Chromosome position | 14989008 |
Reported gene | PDXDC1 |
Mapped gene | LOC728138, PDXDC1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 728138, 23042 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4985167-T |
SNPs | rs4985167 |
Merged | 0 |
SNP id current | 4985167 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000003 |
Pvalue mlog | 6.52287874528033 |
P value text | (ALA) |
Or beta | 0.01 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001180 |