SNP Detail For rs4985167
1.Mapping Information
Human SNP ID rs4985167
Human chromosome chr16
Human SNP position 14989008
Pig chromosome chr6
Pig SNP position 65888375
2.Annotation Information
PubMed ID21829377
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829377
StudyGenetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitPhospholipid levels (plasma)
Initial sample8,866 European ancestry individuals
Replication sampleNA
Region16p13.11
Chromosome idchr16
Chromosome position14989008
Reported genePDXDC1
Mapped geneLOC728138, PDXDC1
Upstream gene id
Downstream gene id
SNP gene ids728138, 23042
Upstream gene distance
Downstream gene distance
SNP risk allelers4985167-T
SNPsrs4985167
Merged0
SNP id current4985167
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequencyNR
P value0.0000003
Pvalue mlog6.52287874528033
P value text(ALA)
Or beta0.01
%95 Ci[NR] % increase
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001180