Human SNP ID | rs4982029 |
---|---|
Human chromosome | chr14 |
Human SNP position | 33007060 |
Pig chromosome | chr7 |
Pig SNP position | 71585687 |
PubMed ID | 20713499 |
---|---|
Journal | Am J Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20713499 |
Study | Cross-disorder genomewide analysis of schizophrenia, bipolar disorder, and depression. |
Disease/Trait | Schizophrenia, bipolar disorder and depression (combined) |
Initial sample | 402 European ancestry schizophrenia cases, 1,021 European ancestry bipolar I cases, 493 European ancestry bipolar II cases, 1,210 European ancestry MDD cases, 1,060 European ancestry controls |
Replication sample | NA |
Region | 14q13.1 |
Chromosome id | chr14 |
Chromosome position | 33007060 |
Reported gene | NPAS3 |
Mapped gene | NPAS3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 64067 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4982029-A |
SNPs | rs4982029 |
Merged | 0 |
SNP id current | 4982029 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.02 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Affymetrix, Perlegen [1574154] (imputed) |
CNV | N |
Mapped trait | unipolar depression, mental or behavioural disorder, bipolar disorder |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761, http://www.ebi.ac.uk/efo/EFO_0000677, http://www.ebi.ac.uk/efo/EFO_0000289 |
Study accession | GCST000774 |