SNP Detail For rs4979078
1.Mapping Information
Human SNP ID rs4979078
Human chromosome chr9
Human SNP position 112060841
Pig chromosome chr1
Pig SNP position 283628770
2.Annotation Information
PubMed ID23650146
JournalGenet Epidemiol
Linkwww.ncbi.nlm.nih.gov/pubmed/23650146
StudyA genome-wide association study for venous thromboembolism: the extended cohorts for heart and aging research in genomic epidemiology (CHARGE) consortium.
Disease/TraitVenous thromboembolism
Initial sample1,618 European ancestry cases, 42,881 European ancestry controls
Replication sample3,231 European ancestry cases, 3,536 European ancestry controls
Region9q31.3
Chromosome idchr9
Chromosome position112060841
Reported geneSUSD1
Mapped geneSUSD1
Upstream gene id
Downstream gene id
SNP gene ids64420
Upstream gene distance
Downstream gene distance
SNP risk allelers4979078-C
SNPsrs4979078
Merged0
SNP id current4979078
Contextintron_variant
Intergenic0
Allele frequency0.86
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.21
%95 Ci[1.11-1.30]
PlatformAffymetrix, Illumina [2543885] (imputed)
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST002012