SNP Detail For rs4972806
1.Mapping Information
Human SNP ID rs4972806
Human chromosome chr2
Human SNP position 176147850
Pig chromosome chr15
Pig SNP position 91416470
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region2q31.1
Chromosome idchr2
Chromosome position176147850
Reported geneNR
Mapped geneHOXD3
Upstream gene id
Downstream gene id
SNP gene ids3232
Upstream gene distance
Downstream gene distance
SNP risk allelers4972806-C
SNPsrs4972806
Merged0
SNP id current4972806
Contextintron_variant
Intergenic0
Allele frequency0.635161429906542
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP47)
Or beta0.1425
%95 Ci[0.08-0.205] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848