SNP Detail For rs4963452
1.Mapping Information
Human SNP ID rs4963452
Human chromosome chr11
Human SNP position 62048331
Pig chromosome chr2
Pig SNP position 8928137
2.Annotation Information
PubMed ID21829377
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21829377
StudyGenetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium.
Disease/TraitPhospholipid levels (plasma)
Initial sample8,866 European ancestry individuals
Replication sampleNA
Region11q12.3
Chromosome idchr11
Chromosome position62048331
Reported geneINCENP
Mapped geneRPS2P37 - LOC100507521
Upstream gene id390206
Downstream gene id100507521
SNP gene ids
Upstream gene distance35683
Downstream gene distance2582
SNP risk allelers4963452-T
SNPsrs4963452
Merged0
SNP id current4963452
Contextregulatory_region_variant
Intergenic1
Allele frequencyNR
P value0.0000006
Pvalue mlog6.22184874961635
P value text(DPA)
Or beta0.02
%95 Ci[NR] % increase
PlatformAffymetrix, Illumina [NR]
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001179