Human SNP ID | rs4963452 |
---|---|
Human chromosome | chr11 |
Human SNP position | 62048331 |
Pig chromosome | chr2 |
Pig SNP position | 8928137 |
PubMed ID | 21829377 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21829377 |
Study | Genetic loci associated with plasma phospholipid n-3 fatty acids: a meta-analysis of genome-wide association studies from the CHARGE Consortium. |
Disease/Trait | Phospholipid levels (plasma) |
Initial sample | 8,866 European ancestry individuals |
Replication sample | NA |
Region | 11q12.3 |
Chromosome id | chr11 |
Chromosome position | 62048331 |
Reported gene | INCENP |
Mapped gene | RPS2P37 - LOC100507521 |
Upstream gene id | 390206 |
Downstream gene id | 100507521 |
SNP gene ids | |
Upstream gene distance | 35683 |
Downstream gene distance | 2582 |
SNP risk allele | rs4963452-T |
SNPs | rs4963452 |
Merged | 0 |
SNP id current | 4963452 |
Context | regulatory_region_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.0000006 |
Pvalue mlog | 6.22184874961635 |
P value text | (DPA) |
Or beta | 0.02 |
%95 Ci | [NR] % increase |
Platform | Affymetrix, Illumina [NR] |
CNV | N |
Mapped trait | phospholipid measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004639 |
Study accession | GCST001179 |