Human SNP ID | rs4963128 |
---|---|
Human chromosome | chr11 |
Human SNP position | 589564 |
Pig chromosome | chr2 |
Pig SNP position | 324164 |
PubMed ID | 18204446 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18204446 |
Study | Genome-wide association scan in women with systemic lupus erythematosus identifies susceptibility variants in ITGAM, PXK, KIAA1542 and other loci. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 720 European ancestry female cases, 2,337 European ancestry female controls |
Replication sample | 1,846 European ancestry female cases, 1,825 European ancestry female controls |
Region | 11p15.5 |
Chromosome id | chr11 |
Chromosome position | 589564 |
Reported gene | KIAA1542 |
Mapped gene | PHRF1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57661 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4963128-? |
SNPs | rs4963128 |
Merged | 0 |
SNP id current | 4963128 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.34 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.28 |
%95 Ci | [1.18-1.37] |
Platform | Illumina [317501] |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000142 |
PubMed ID | 21408207 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21408207 |
Study | Differential genetic associations for systemic lupus erythematosus based on anti-dsDNA autoantibody production. |
Disease/Trait | Systemic lupus erythematosus |
Initial sample | 811 anti-dsDNA positive European ancestry cases, 906 anti-dsDNA negative European ancestry cases, 4,813 European ancestry controls |
Replication sample | NA |
Region | 11p15.5 |
Chromosome id | chr11 |
Chromosome position | 589564 |
Reported gene | KIAA1542 |
Mapped gene | PHRF1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 57661 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs4963128-? |
SNPs | rs4963128 |
Merged | 0 |
SNP id current | 4963128 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.66 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | (anti-dsDNA +) |
Or beta | 1.33 |
%95 Ci | [1.18-1.49] |
Platform | Illumina [421318] (imputed) |
CNV | N |
Mapped trait | systemic lupus erythematosus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002690 |
Study accession | GCST000996 |